Publications

• 2026

  Distinct SOX9 single-molecule dynamics characterize adult differentiation and fetal-like reprogrammed states in intestinal organoids

  Walther, N., Anantakrishnan, S., Dailey, G.M., Maurer, A.C., Cattoglio, C.

  Stem Cell Reports

  doi.org/10.1016/j.stemcr.2025.102787

• 2025

  Bis(trifluoromethyl)carborhodamines: Highly Fluorogenic, Far-Red to Near-Infrared Dyes for Live Cell Fluorescence Microscopy, Activity-Based Sensing, and Single-Molecule Microscopy

  Gerstner, N.C., McCann, J.T., Martin, J.G., Henn, K.M., Riske, K., Anantakrishnan, S., Graham, T.G., Darzacq, X., et al.

  Journal of the American Chemical Society

  doi.org/10.1021/jacs.5c05473

• 2025

  Assembly and Dynamics of Transcription Initiation Complexes

  Esbin, M.N., Cookis, T., Anantakrishnan, S., Abidi, A.A., Karr, J., Cattoglio, C., Darzacq, X., Tjian, R.

  Annual Review of Biochemistry

  doi.org/10.1146/annurev-biochem-072324-035226

• 2024

  Automated live-cell single-molecule tracking in enteroid monolayers reveals transcription factor dynamics probing lineage-determining function

  Walther, N., Anantakrishnan, S., Graham, T.G., Dailey, G.M., Tjian, R., Darzacq, X.

  Cell Reports

  doi.org/10.1016/j.celrep.2024.114914

• 2023

  Thermodynamic architecture and conformational plasticity of GPCRs

  Anantakrishnan, S., Naganathan, A.N.

  Nature Communications

  doi.org/10.1038/s41467-023-35790-z

• 2022

  Probing patterning in microbial consortia with a cellular automaton for spatial organisation

  Venkatraghavan, S., Anantakrishnan, S., Raman, K.

  Scientific Reports

  doi.org/10.1038/s41598-022-20705-7

• 2021

  Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs

  Beal, J., Baldwin, G.S., Farny, N.G., Gershater, M., et al.; iGEM Interlab Study Contributors

  PLOS ONE

  doi.org/10.1371/journal.pone.0252263

• 2020

  pPerturb: A Server for Predicting Long-Distance Energetic Couplings and Mutation-Induced Stability Changes in Proteins via Perturbations

  Gopi, S., Devanshu, D., Rajasekaran, N., Anantakrishnan, S., Naganathan, A.N.

  ACS Omega

  doi.org/10.1021/acsomega.9b03371

• 2020

  Robust estimation of bacterial cell count from optical density

  Beal, J., Farny, N.G., Haddock-Angelli, T., Selvarajah, V., et al.; iGEM Interlab Study Contributors

  Communications Biology

  doi.org/10.1038/s42003-020-01127-5

Also see my Google Scholar and ORCID profiles for the most up-to-date list.